The following errors occur when running “$ORACLE_HOME/crs/install/rootcrs.sh -postpatch”:
2024-11-09 13:31:20: Executing cmd: /bin/rpm -q sles-release
2024-11-09 13:31:20: Command output:
> error: rpmdb: BDB0113 Thread/process 128527/140400711669824 failed: BDB1507 Thread died in Berkeley DB library
> error: db5 error(-30973) from dbenv->failchk: BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery
> error: cannot open Packages index using db5 - (-30973)
> error: cannot open Packages database in /var/lib/rpm
> error: rpmdb: BDB0113 Thread/process 128527/140400711669824 failed: BDB1507 Thread died in Berkeley DB library
> error: db5 error(-30973) from dbenv->failchk: BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery
> error: cannot open Packages database in /var/lib/rpm
> package sles-release is not installed
>End Command output
2024-11-09 13:31:20: Check if the startup mechanism systemd is being used
2024-11-09 13:31:20: Executing cmd: /bin/rpm -qf /sbin/init
2024-11-09 13:31:20: Command output:
> error: rpmdb: BDB0113 Thread/process 128527/140400711669824 failed: BDB1507 Thread died in Berkeley DB library
> error: db5 error(-30973) from dbenv->failchk: BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery
> error: cannot open Packages index using db5 - (-30973)
> error: cannot open Packages database in /var/lib/rpm
> error: rpmdb: BDB0113 Thread/process 128527/140400711669824 failed: BDB1507 Thread died in Berkeley DB library
> error: db5 error(-30973) from dbenv->failchk: BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery
> error: cannot open Packages database in /var/lib/rpm
> error: rpmdb: BDB0113 Thread/process 128527/140400711669824 failed: BDB1507 Thread died in Berkeley DB library
> error: db5 error(-30973) from dbenv->failchk: BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery
> error: cannot open Packages database in /var/lib/rpm
> file /sbin/init is not owned by any package
>End Command output
2024-11-09 13:31:20: Executing cmd: /u01/app/19.0.0/grid/bin/clsecho -p has -f clsrsc -m 180 '/bin/rpm -qf /sbin/init' '1'
2024-11-09 13:31:20: Executing cmd: /u01/app/19.0.0/grid/bin/clsecho -p has -f clsrsc -m 180 '/bin/rpm -qf /sbin/init' '1'
2024-11-09 13:31:20: Command output:
> CLSRSC-180: An error occurred while executing the command '/bin/rpm -qf /sbin/init'
>End Command output
2024-11-09 13:31:20: CLSRSC-180: An error occurred while executing the command '/bin/rpm -qf /sbin/init'
2024-11-09 13:31:20: ###### Begin DIE Stack Trace ######
2024-11-09 13:31:20: Package File Line Calling
2024-11-09 13:31:20: --------------- -------------------- ---- ----------
2024-11-09 13:31:20: 1: main rootcrs.pl 358 crsutils::dietrap
2024-11-09 13:31:20: 2: s_crsutils s_crsutils.pm 2729 main::__ANON__
2024-11-09 13:31:20: 3: s_crsutils s_crsutils.pm 2701 s_crsutils::s_checkLinuxInitMethod
2024-11-09 13:31:20: 4: s_crsutils s_crsutils.pm 3712 s_crsutils::s_is_Linux_Systemd
2024-11-09 13:31:20: 5: oraClusterwareComp::oraohasd oraohasd.pm 1537 s_crsutils::s_copy_afdinit_init
2024-11-09 13:31:20: 6: crspatch crspatch.pm 730 oraClusterwareComp::oraohasd::update_OHASD
2024-11-09 13:31:20: 7: crspatch crspatch.pm 1912 crspatch::updateSystemFiles
2024-11-09 13:31:20: 8: crspatch crspatch.pm 2249 crspatch::performPostPatch
2024-11-09 13:31:20: 9: crspatch crspatch.pm 526 crspatch::crsPostPatch
2024-11-09 13:31:20: 10: main rootcrs.pl 371 crspatch::new
2024-11-09 13:31:20: ####### End DIE Stack Trace #######
2024-11-09 13:31:20: ROOTCRS_POSTPATCH_UPDATE_OHASD_SERVICE checkpoint has failed
Solution
OS level RPM database is corrupted.
Recreate RPM database at OS level to resolve this issue:
1. As root OS user run the following:
# rm -f /var/lib/rpm/__*
# /bin/rpm –rebuilddb
# echo $?
2. Validate the rpm database, as the root user:
# /bin/rpm -qa | more
3. If last command listing rpms correctly, then re-run postpatch command or resume your opatchauto patching session:
As root OS user:
cd $GI_HOME/crs/install
For Cluster Grid Infrastructure Install:#./rootcrs.sh -postpatch
For Restart Grid Infrastructure Install:#./roothas.sh -postpatch
Reference
Postpatch Command Fails on Grid Infrastructure Home Due To rpm Database Corruption At The OS Level (Doc ID 2365433.1)
